[Dock-fans] dock

Terry Lang terry at cgl.ucsf.edu
Mon Aug 15 11:56:17 PDT 2005


Dear Zarrabi,

         You can use another program to calculate the molecular surface 
if it calculates both the surface and the normals.  The ms file format 
that sphgen needs can be found in the DOCK 4 manual at 
http://dock.compbio.ucsf.edu/Old_Versions/index.htm.  However, the ms 
program we recommend using is free as well, and you will not need to 
write a format converter.  You can find the program at 
http://www.cgl.ucsf.edu/Overview/software.html.

Sincerely,
Terry


mahbubeh zarrabi wrote:

>dear freinds
>can i use other program (instead of ms)for molecular
>surface calculation in dock?
>best wishes
>zarrabi
>
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-- 
P. Therese Lang
Kuntz and James Labs
UCSF--Chemistry and Chemical Biology
Phone: (415)476-3986

 





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