[Dock-fans] UCSF DOCK

Nancy Deng jdeng at adrik.bchs.uh.edu
Thu Jul 7 11:01:58 PDT 2005


it's definitely not free. I did not use sybyl either. I use VEGA to get the
charges of protein and ligand both. Also other good tools for structure
visulization are available free on line, such as VMD, swiss pdb viewer (deep
viewer), pymol, etc.

good luck,

nancy

----- Original Message ----- 
From: "Sheng-Hung Wang" <gentamicin5 at yahoo.com.tw>
To: <dock-fans at docking.org>
Sent: Thursday, July 07, 2005 9:54 AM
Subject: Re: [Dock-fans] UCSF DOCK


> Try PMOL2Q, it's free.
> http://home.pchome.com.tw/team/gentamicin/mol/mol.htm
>
>
> --- Shmuel Elmakies <shmulik at bioinfo.tau.ac.il>
>
>>
>> Dear Sir/madam
>>
>> I am new to DOCK 5. Reviewing the tutorial I noticed that the DOCK
>> procedure requires sybyl. This one is not mentioned in the
>> installation
>> section in the manual, and I was wondering whether it is mandatory or
>> can
>> be substituted by another package. how can I get it? Is it freeware?
>>
>> Best Regards,
>>
>> Shmuel Elmakies
>> System Administrator
>> Bioinformatics Unit
>> G.S. Wise faculty of Life Science
>> Tel Aviv University
>> Phone 972-3-6405099
>> _______________________________________________
>> Dock-fans mailing list
>> Dock-fans at docking.org
>> http://blur.compbio.ucsf.edu/mailman/listinfo/dock-fans
>>
>
>
> __________________________________________________
> ·Q§Y®É¦¬¨ì·s«H³qª¾¡H
> °¨¤W¤U¸üYahoo!©_¼¯§Y®É³q°T
> http://messenger.yahoo.com.tw/
> _______________________________________________
> Dock-fans mailing list
> Dock-fans at docking.org
> http://blur.compbio.ucsf.edu/mailman/listinfo/dock-fans 




More information about the Dock-fans mailing list