[Dock-fans] what is the difference between Sybyl PDB format and RCSB PDB format?

RyangGuk Kim RyangGuk.Kim at bioinformatics.buffalo.edu
Tue Nov 1 12:20:52 PST 2005


dear dr. dung,

i forgot to post the answer i got. 

below is the answer to my question from Dr. Dolan of Tripos. Sybyl format was a pdb format with only coordinates, sequences and headers.

-----
RyangGuk,

1. The SYBYL .pdb file format follows version 2.2 of the RCSB, but has a
lot of information stripped out of it. See the attached files. One is
from the RCSB and the other is output from SYBYL.

2. Of course SYBYL can convert a RCSB .pdb to a SYBYL-formatted .pdb and
as far as I know, this is the only way. I even looked at Babel, but I
didn?t see anything related there.

Best wishes,

Mike
-- 
===============================================================
               **** SYBYL 7.1 available now! ****

Visit our NEW tech support website : http://support.tripos.com/
---------------------------------------------------------------
     Michael A. Dolan, Ph.D. | Phone: 1(800)323-2960
     Support Scientist | 314-647-1099
     Tripos, Inc. | Fax: 314-647-9241
     1699 South Hanley Road | Email: mdolan at tripos.com
     St. Louis, MO 63144 | http://www.tripos.com
===============================================================

-----

best,
ryangguk kim

-------------- next part --------------
A non-text attachment was scrubbed...
Name: pdb1vlc.pdb
Type: chemical/x-pdb
Size: 234576 bytes
Desc: not available
Url : http://blur.compbio.ucsf.edu/pipermail/dock-fans/attachments/20051101/ff7cb688/pdb1vlc.pdb
-------------- next part --------------
A non-text attachment was scrubbed...
Name: pdb1vlc.ent
Type: application/octet-stream
Size: 265194 bytes
Desc: not available
Url : http://blur.compbio.ucsf.edu/pipermail/dock-fans/attachments/20051101/ff7cb688/pdb1vlc.obj


More information about the Dock-fans mailing list