[Dock-fans] Other softwares to generate surface

Dominic Pilon dominic.pilon at umontreal.ca
Wed Oct 5 09:03:11 PDT 2005


Hi Le,

Once you get use to it, DMS is actually very easy to use. Here is a webpage 
that explains it a little more

http://www.csb.yale.edu/userguides/graphics/midas/man/dms.html

Hope it helps

-- 
Dominic Pilon
Université de Montréal
dominic.pilon at umontreal.ca
514-343-6111 #3827

On October 5, 2005 03:29 am, Le Tien Dung wrote:
> Hello,
>
> I found it difficult to use the DMS to generate the molecular surface of
> the target molecule for docking.
>
> Is there anyone use other program (preferly free) to generate the surface?
> Did any one try with Deep View (conversion of file type may be required),
> or UCSF Chimera?
>
> I am running the Demo. Since there is no selected_spheres.sph in the 2_site
> folder, it seems that I have to run SPHGEN using the selected_spheres.in,
> right? I ran but got this error "segmentation fault (core dump)" and the
> file OUTSPH has 0kb
>
> It would be grateful if someone can help me out of this.
>
> Thank you
>
> LE
>
>
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