[Dock-fans] Energy score interpretation

Aalok Nadkar aalok.nadkar at gmail.com
Thu Oct 13 09:28:34 PDT 2005


Thanks..
I applied the patches, but I could not compile dock5 on my system. I
am using Mandrake Linux 9.2.
Is there a problem with my compiler or am I missing something?

Thanks in advance,

Aalok




On 10/12/05, Terry Lang <terry at cgl.ucsf.edu> wrote:
> Dear Aalok,
>
>           Have you applied all of the bug fixes?  They can be found at
> http://dock.compbio.ucsf.edu/DOCK_5/DOCK_bugfixes.htm.  The result you
> are getting is similar to some we saw in the pre-fixed versions.
>
> Sincerely,
> Terry
>
>
> Aalok Nadkar wrote:
>
> >Hi all,
> >
> >I got this result from my docking run.
> >Can somebody help me interpret it?  All the values I have seen are much higher.
> >Am I missing something?
> >
> >RMSD:          31.1563
> >########## Energy Score:       -19067.902954
> >##########          vdw:         1743.725952
> >##########           es:       -20811.628906
> >
> >
> >Thank you,
> >
> >Aalok Nadkar
> >
> >Aalok Nadkar
> >Research Engineering Associate
> >Chemistry and Biochemistry
> >University of Texas at Arlington
> >_______________________________________________
> >Dock-fans mailing list
> >Dock-fans at docking.org
> >http://blur.compbio.ucsf.edu/mailman/listinfo/dock-fans
> >
> >
>
> --
> P. Therese Lang
> Kuntz and James Labs
> UCSF--Chemistry and Chemical Biology
> Phone: (415)476-3986
>
>
>
>
>



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