[Dock-fans] Installation of Dock 5on Solaris

Terry Lang terry at cgl.ucsf.edu
Mon Oct 17 10:10:12 PDT 2005


Dear Muhammad,

          We have not really tested DOCK on Sun, so I do not have any 
good answers.  However, the errors you are getting are from the MPI 
library, not DOCK.  Were you able to successfully compile and install 
the MPICH or did you did you get errors as well?

Sincerely,
Terry


Muhammad Hagras wrote:

>Hi  dears,
>I was trying to install Dock 5 on Solaris,  I tried to compilethe source
>code included in the linux version , is that the right code to compile
>on Solaris or what ?
>And after compiling the MPICH , the compiling of this code always gave
>me these eroros :
>"g++ -O2 -w dock.cpp simplex.lnx.o amber_typer.lnx.o base_mpi.lnx.o
>base_score.lnx.o conf_gen.lnx.o dockmol.lnx.o library_file.lnx.o
>master_score.lnx.o orient.lnx.o score.lnx.o utils.lnx.o -lm -lmpich
>-lpthread -o dock5 -I/home/mhagras/dock5/mpich/include
>-L/home/mhagras/dock5/mpich/lib
>Undefined                       first referenced
> symbol                             in file
>bind                               
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>recv                               
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>socketpair                         
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_utils.o)
>xdr_double                         
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>getsockname                        
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>xdr_opaque                         
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>accept                             
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>xdr_u_char                         
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>xdr_u_long                         
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>listen                             
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>gethostbyname                      
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>socket                             
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>xdr_float                          
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>xdr_short                          
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>xdr_u_int                          
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>setsockopt                         
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>getsockopt                         
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>connect                            
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>xdrmem_create                      
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>xdr_u_short                        
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>xdr_char                           
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>xdr_long                           
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>getpeername                        
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>inet_ntoa                          
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
>xdr_int                            
>/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
>shutdown                           
>/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_sr.o)
>ld: fatal: Symbol referencing errors. No output written to dock5
>collect2: ld returned 1 exit status
>make: *** [dock] Error 1"
>
>So what I should do to make Dock 5 run on Solaris ?
>thanks for help,
>My Regards
>		
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>  
>

-- 
P. Therese Lang
Kuntz and James Labs
UCSF--Chemistry and Chemical Biology
Phone: (415)476-3986

 





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