[Dock-fans] Installation of Dock 5on Solaris

Kaitlyn Hwang hwang at mcs.anl.gov
Wed Oct 19 12:38:49 PDT 2005


If the USE_MPI is set to false in utils.h, wouldn't the application not
depend on mpi and be able to compile?

kaitlyn

On Wed, 19 Oct 2005, Muhammad Hagras wrote:

> Dear Terry,
> Thanks for your reply,
> Yeah, that is right, the problem is with the MPICH library,
> I have tried All the versions of MPICH on solaris and no one is working,
> So what I did is to comment all the code in DOCK that uses MPICH and
> DOCK compiled very well after that,
> Thanks again,
> My Regards
>
> >>> Terry Lang <terry at cgl.ucsf.edu> 10/17/05 10:10 AM >>>
> Dear Muhammad,
>
>           We have not really tested DOCK on Sun, so I do not have any
> good answers.  However, the errors you are getting are from the MPI
> library, not DOCK.  Were you able to successfully compile and install
> the MPICH or did you did you get errors as well?
>
> Sincerely,
> Terry
>
>
> Muhammad Hagras wrote:
>
> >Hi  dears,
> >I was trying to install Dock 5 on Solaris,  I tried to compilethe
> source
> >code included in the linux version , is that the right code to compile
> >on Solaris or what ?
> >And after compiling the MPICH , the compiling of this code always gave
> >me these eroros :
> >"g++ -O2 -w dock.cpp simplex.lnx.o amber_typer.lnx.o base_mpi.lnx.o
> >base_score.lnx.o conf_gen.lnx.o dockmol.lnx.o library_file.lnx.o
> >master_score.lnx.o orient.lnx.o score.lnx.o utils.lnx.o -lm -lmpich
> >-lpthread -o dock5 -I/home/mhagras/dock5/mpich/include
> >-L/home/mhagras/dock5/mpich/lib
> >Undefined                       first referenced
> > symbol                             in file
> >bind
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >recv
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >socketpair
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_utils.o)
> >xdr_double
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >getsockname
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >xdr_opaque
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >accept
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >xdr_u_char
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >xdr_u_long
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >listen
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >gethostbyname
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >socket
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >xdr_float
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >xdr_short
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >xdr_u_int
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >setsockopt
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >getsockopt
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >connect
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >xdrmem_create
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >xdr_u_short
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >xdr_char
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >xdr_long
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >getpeername
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >inet_ntoa
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_util.o)
> >xdr_int
> >/home/mhagras/dock5/mpich/lib/libmpich.a(bswap2.o)
> >shutdown
> >/home/mhagras/dock5/mpich/lib/libmpich.a(p4_sock_sr.o)
> >ld: fatal: Symbol referencing errors. No output written to dock5
> >collect2: ld returned 1 exit status
> >make: *** [dock] Error 1"
> >
> >So what I should do to make Dock 5 run on Solaris ?
> >thanks for help,
> >My Regards
> >
> >_______________________________________________
> >Dock-fans mailing list
> >Dock-fans at docking.org
> >http://blur.compbio.ucsf.edu/mailman/listinfo/dock-fans
> >
> >
>
> --
> P. Therese Lang
> Kuntz and James Labs
> UCSF--Chemistry and Chemical Biology
> Phone: (415)476-3986
>
>
>
>
>
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>



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