[Dock-fans] About amber scoring

xxffliu at 163.com xxffliu at 163.com
Mon Oct 9 19:41:51 PDT 2006


 Dear dockers:
 I'm interested in DOCK6's new function in amber scoring, because it's claimed to support "induced fit" docking in some way. I just wonder can I define a sphere of residues within some range of the ligand as flexible region instead of the whole receptor in case to reduce computation cost. It's seemed that the NAB expressions mentioned in the mannul doesn't support this query. I would appreciate your kindly reply.
Good DOCKing!!  
  
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