[Dock-fans] min anchor size -query

Abdul Hameed, MohamedDiwanMo mabdu3 at email.uky.edu
Wed Jul 11 09:16:00 PDT 2007


Hello all,

I am trying target a small sub-pocket in a protein.  Will it be useful to reduce the "min_anchor_size" parameter to 6 in that case?

The default value is given as 40. I am also curious to know whether changing this parameter will have any big impact on the results.

Your comments will be very helpful.

Thanks and Regards,
Mohamed Diwan
Graduate student,
University of Kentucky.
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