[Dock-fans] Amber scoring

Alessandro Nascimento al.s.nascimento at gmail.com
Wed Jul 25 17:46:05 PDT 2007

Hi Dock-fans

I would like to know from those who have already achieved good results
using grid (primary) / amber (secondary) score to search databases
like zinc: is there any good threshold to be used as an indicative of
success by amber scoring function?

In dock6 tutorial page there's a graph showing binders and decoys
using amber score. There, the best binder achieves ~ -17.00 as amber
score. Would this value be a good indicative?

[ ]s


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