[Dock-fans] cygwin: aborted (core dumped)
sfinck187 at yahoo.com
Sun Mar 18 14:43:02 PST 2007
Phil: Thanks for the suggestion.
Do you mean at the time I compile cygwin or DOCK?
Where do I change the settings at compile? Steve
----- Forwarded Message ----
From: Philip Crawford <p.crawford at unsw.edu.au>
To: Steven Finckbeiner <sfinck187 at yahoo.com>; dock-fans at docking.org
Sent: Sunday, March 18, 2007 6:29:04 PM
Subject: RE: [Dock-fans] cygwin: aborted (core dumped)
Hi. On Cygwin, the limit, ulimit etc commands have no
effect. Things like stacksize need to be set at compile (link) time. (I
found out this with my brother's help way back.)
If you have access to Visual Studio 6 (or later, probably)
there is a program with that called EDITBIN.EXE which can modify these
parameters after compile time.
It is also possible to pass link parameters to gcc, at
least for stacksize, which was what I needed to increase. But that was a
stackdump, so your requirements may be different.
Philip Crawford B Comp Sc, MIEEE
Medicine Computer Support Unit
University of NSW, Sydney, NSW, 2052
Phone: +61-2-9385 2564
Fax: +61-2-9385 1258
Email: p.crawford at unsw.edu.au
From: dock-fans-bounces at docking.org
[mailto:dock-fans-bounces at docking.org] On Behalf Of Steven
Sent: Sunday, 18 March 2007 11:05 AM
dock-fans at docking.org
Subject: [Dock-fans] cygwin: aborted (core
to dock folate into DHFR.
My box is as small as the binding
When I run DOCK in cygwin, I get this:
Initializing Library File
Routines . . .
Initializing Orienting Routines . . .
Score Routines . . .
Reading the energy grid from
Error: memory exhausted!
For Unix platforms
increase the datasize, stacksize, and
memoryuse using the limit,
ulimit, or unlimit commands.
Aborted (core dumped)
I have the full
install of cygwin and I can't find any of these commands. When I ran
showbox I didn't add any extra space. I can't make it any smaller.
is nice to think that there are so many unsolved puzzles ahead for biology,
although I wonder whether we will ever find enough graduate
students." Lewis Thomas
Roswell Park Cancer Institute
Elm and Carlton Streets
Buffalo, NY 14263-0001
Expecting? Get great news right away with email
Try the Yahoo!
Food fight? Enjoy some healthy debate
in the Yahoo! Answers Food & Drink Q&A.
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the Dock-fans