[Dock-fans] DOCK 6 installation -reg

Abdul Hameed, MohamedDiwanMo mabdu3 at email.uky.edu
Thu May 10 07:23:27 PDT 2007


Hello all,

 

I am trying to install DOCK 6 on Linux (redhat 4.2). 

 

Initially I had problems with flex and yacc. But after installing flex
and bison, I am able to complete the installation of dock. 

 

During the installation process I am getting the warning message (given
below), particularly about an incompatible pointer type.

Can we ignore this warning? 

Is there any particular reason to get this warning message? If someone
can suggest why we get this, it will be very helpful.

 

ar: creating nab.a

In file included from
/usr/lib/gcc/i386-redhat-linux/3.4.4/../../../../include/c++/3.4.4/backw
ard/strstream:51,

                 from sphere_selector.cpp:7:

/usr/lib/gcc/i386-redhat-linux/3.4.4/../../../../include/c++/3.4.4/backw
ard/backward_warning.h:32:2: warning: #warning This file includes at
least one deprecated or antiquated header. Please consider using one of
the 32 headers found in section 17.4.1.2 of the C++ standard. Examples
include substituting the <X> header for the <X.h> header for C++
includes, or <iostream> instead of the deprecated header <iostream.h>.
To disable this warning use -Wno-deprecated.

residue.c: In function `ResidueConnect':

residue.c:336: warning: passing arg 1 of `AtomBondTo' from incompatible
pointer type

residue.c:336: warning: passing arg 2 of `AtomBondTo' from incompatible
pointer type

residue.c: In function `ResidueMutate':

residue.c:464: warning: passing arg 1 of `BuildFixInternals' from
incompatible pointer type

unitio.c: In function `zUnitIOSaveAmberParmFormat':

unitio.c:4047: warning: passing arg 1 of `SortByInteger' from
incompatible pointer type

unitio.c:4047: warning: passing arg 4 of `SortByInteger' from
incompatible pointer type

unitio.c: In function `zUnitIOSaveAmberParmFormat_old':

unitio.c:6055: warning: passing arg 1 of `SortByInteger' from
incompatible pointer type

unitio.c:6055: warning: passing arg 4 of `SortByInteger' from
incompatible pointer type

graphUtil.c: In function `GraphUtilFindAllSmallestRingsAndRingGroups':

graphUtil.c:675: warning: passing arg 1 of `SortByInteger' from
incompatible pointer type

graphUtil.c:675: warning: passing arg 4 of `SortByInteger' from
incompatible pointer type

amber.c: In function `uAmberReadUnitFromPrep':

amber.c:986: warning: passing arg 1 of `SortByInteger' from incompatible
pointer type

amber.c:986: warning: passing arg 4 of `SortByInteger' from incompatible
pointer type

build.c: In function `bBuildFlipChiralityFor':

build.c:1901: warning: passing arg 1 of `SortByInteger' from
incompatible pointer type

build.c:1901: warning: passing arg 4 of `SortByInteger' from
incompatible pointer type

build.c:1907: warning: passing arg 1 of `GraphUtilFindAllSmallestRings'
from incompatible pointer type

build.c: In function `BuildInternalsForSimpleRings':

build.c:2185: warning: passing arg 1 of
`GraphUtilFindAllSmallestRingsAndRingGroups' from incompatible pointer
type

model.c: In function `zModelOrderAtoms':

model.c:497: warning: passing arg 1 of `Sift' from incompatible pointer
type

pdbFile.c: In function `zPdbBuildCoordinatesForContainer':

pdbFile.c:1088: warning: passing arg 1 of `BuildFixInternals' from
incompatible pointer type

pdbFile.c: In function `zPdbAddAtom':

pdbFile.c:1207: warning: passing arg 1 of `BuildInternalsForContainer'
from incompatible pointer type

pdbFile.c: In function `writeTER':

pdbFile.c:1761: warning: initialization from incompatible pointer type

tools.c: In function `iToolDistanceSearch':

tools.c:1643: warning: passing arg 1 of `SortByDouble' from incompatible
pointer type

tools.c:1643: warning: passing arg 4 of `SortByDouble' from incompatible
pointer type

tools.c: In function `ToolOrientPrincipleAxisAlongCoordinateAxis':

tools.c:1714: warning: passing arg 2 of `MathOpDiagonalize' from
incompatible pointer type

conflicts: 6 shift/reduce

commands.c: In function `oCmd_impose':

commands.c:3835: warning: passing arg 1 of `bBuildChangeInternalBond'
from incompatible pointer type

commands.c:3859: warning: passing arg 1 of `bBuildChangeInternalAngle'
from incompatible pointer type

commands.c:3885: warning: passing arg 1 of `bBuildChangeInternalTorsion'
from incompatible pointer type

 

Thank you,

Mohamed Diwan

Graduate student

University of Kentucky

 

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