sudmukh at yahoo.com
Tue Nov 6 08:20:14 PST 2007
You could run dock with 'num_scored_conformers_written' set to a high number (e.g. 500) with clustering turned on. Then you can select the top 20 or so clusterheads from the mol2 file using a script, or by running dock again and using max_ligands=20.
Graduate Student, Robert C. Rizzo Lab
Dept. of Applied Math & Statistics, Stony Brook University
----- Original Message ----
From: Imtiaz M. <biobrain at gmail.com>
To: dock-fans at docking.org
Sent: Monday, November 5, 2007 8:20:14 AM
Subject: [Dock-fans] ranked.mol2
I am using the following options
Please tell me how I can get clusters of the different possible
solutions. How I can select Top 20 solution for my docking experiment.
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