[Dock-fans] [Fwd: help]

Scott Brozell sbrozell at scripps.edu
Tue Sep 25 14:24:11 PDT 2007


Hi,

On Mon, 24 Sep 2007, John J. Irwin wrote:
>
> Dear Sir��     When I do the docking, I enter the conmand:> dock6 -i *.in -o
> *.outI get someting like the following error: terminate called after throwing
> an instance of 'std::bad_alloc'
>   what():  St9bad_alloc
> Aborted to check the *.out file, I get the something like the following
> erros:Initializing Library File Routines...
> Initializing Orienting Routines...
> Initializing Grid Score Routines...
>  Reading the energy grid from grid.nrg
> Error: memory exhausted!
>   For Unix platforms increase the datasize, stacksize, and
>   memoryuse using the limit, ulimit, or unlimit commands. what is causing the
> error and how can I fix it?                                         Sincerely,
> Feijuan Huang

As I inquired in a similar thread -
did you try the suggested error recovery  ??

http://blur.compbio.ucsf.edu/pipermail/dock-fans/2007-September/001184.html

Scott



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