[Dock-fans] docking problem

Scott Brozell sbrozell at scripps.edu
Tue Apr 1 13:50:19 PDT 2008


Hi,

http://dock.compbio.ucsf.edu/DOCK_6/tutorials/sphere_generation/generating_spheres.htm
covers active site preparation.

Scott

On Fri, 14 Mar 2008, gomathy ramanathan wrote:

> Iam trying to dock a protein -ligand(complexed crystal structure) .
> Everything goes fine , but it does not dock into the prescribed active
> site as in the PDB structure.Instead it docks in other places when i
> splitted the outfile. Can anyone help me to solve this problem.
> thanks



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