[Dock-fans] Sphere Generation

Imtiaz M. biobrain at gmail.com
Fri Apr 4 05:12:13 PDT 2008

Dear All,

I am following the DOCk tutorial for my Docking Experiment.

For sphere generation I have found the following in the tutorial

To convert the first and largest cluster in the sphere file to pdb format,
use the command "showsphere <
Below is a picture of the largest cluster, where the protein is shown in
purple and the spheres are shown in yellow

I do not know the active site in my receptor file  now how I can
create "sphgen_cluster.sph"
so that I can use this instead of selected _sphere.sph  or other wise  how i
can creat my selected _sphere.sph if active site is not known to me.


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