[Dock-fans] dock installation

inderjit yadav inderjitbioinfo at gmail.com
Tue Apr 8 22:48:42 PDT 2008


 hello
 please help me on dock installation on cluster .sir when I m installing
dock on cluster i m getting a lot of errors

At first I use      ./configure gnu.parallel
it tell to define MPICH_HOME in the root directory of  mpich2 i define it in
my mpich directory

1) then i do make dock  command

it gives error that mpi.h not found in the dock6/src/dock

g++ -c  -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX
-I/include -O2 -o base_mpi.o  base_mpi.cpp

In file included from base_mpi.cpp:2:

base_mpi.h:11:19: mpi.h: No such file or directory

base_mpi.cpp: In member function `bool Base_MPI::initialize_mpi(int*,
char***)':

base_mpi.cpp:274: error: `MPI_Init' was not declared in this scope

base_mpi.cpp:275: error: `MPI_COMM_WORLD' was not declared in this scope



2) i make a symbolic link of it with mpi.h of  mpich directory but now it is
sowing the errors in mpi.h like

make[1]: Entering directory `/home/inderjit/dock6/src/dock'
g++ -c  -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX
-I/include -O2 -o base_mpi.o  base_mpi.cpp
In file included from base_mpi.h:11,
                 from base_mpi.cpp:2:
mpi.h:230:21: mpidefs.h: No such file or directory
mpi.h:309:23: mpi_errno.h: No such file or directory
In file included from base_mpi.h:11,
                 from base_mpi.cpp:2:
mpi.h:319: error: `MPI_Status' has not been declared
mpi.h:319: error: ISO C++ forbids declaration of `parameter' with no type
mpi.h:320: error: `MPI_Status' was not declared in this scope
mpi.h:320: error: expected primary-expression before ',' token
base_mpi.cpp: In member function `bool Base_MPI::listen_for_request()':
base_mpi.cpp:414: error: `MPI_Status' was not declared in this scope
base_mpi.cpp:414: error: expected `;' before "status"
base_mpi.cpp:420: error: `status' was not declared in this scope
base_mpi.cpp: In member function `bool Base_MPI::send_queue_request()':
base_mpi.cpp:451: error: `MPI_Status' was not declared in this scope

3) earlier i get an error while making command
                       make utils
      that yacc command not found


sir please help me in this




INDERJIT
CCSHAU HISAR
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