[Dock-fans] how to visaulise the interactions

John J. Irwin jji at cgl.ucsf.edu
Wed Feb 20 07:23:10 PST 2008


Hi Thomas

You want Chimera,  http://www.cgl.ucsf.edu/chimera/download.html

PyMol also very good. http://pymol.sf.net/

Good luck

John
UCSF DOCK Team

Thomas Leonard wrote:
> Hi Dock Fans,
>  
> I would like to visualise the interactions of the ligands in mol2 with 
> a pdb structure.
> How can I do that .
> Please advice me some visualisation tools which can help me to 
> identify the interaction of pdb and mol2 files in the same binding 
> site compatible with dock6 results.
>  
> is it possible to save the tput structure with docked ligands and 
> receptor in dock6
>  
> Thanks in advance for a valuable advice.
>  
> Thomas
>
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