[Dock-fans] dock 6.2 error message

snoze pa snoze.pa at gmail.com
Wed Jul 16 11:51:32 PDT 2008


Dear Dockers,
 I am trying to compile the dock6.2 but getting following error
messages in fedora 9. Both stand alone and parallel version are
showing following error messages.
Any Idea or help? Thanks for your help.
s


Starting installation of
DOCK v6.2
at Wed Jul 16 13:49:10 CDT 2008.

cd ../src && make install
make[1]: Entering directory `/home/guest/PROG/dock6/src'
cd dock && make install
make[2]: Entering directory `/home/guest/PROG/dock6/src/dock'
g++ -c  -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK
-DMPICH_SKIP_MPICXX -I/usr/local/mpich2//include -O2 -o amber_typer.o
amber_typer.cpp
amber_typer.cpp: In function 'char* white_line(char*)':
amber_typer.cpp:16: error: 'strlen' was not declared in this scope
amber_typer.cpp: In function 'int assign_node(ATOM_TYPE_NODE&, int)':
amber_typer.cpp:67: error: 'strtok' was not declared in this scope
amber_typer.cpp:67: error: 'strcpy' was not declared in this scope
amber_typer.cpp:88: error: 'strncmp' was not declared in this scope
amber_typer.cpp: In function 'int check_type(const char*, const char*)':
amber_typer.cpp:126: error: 'strstr' was not declared in this scope
amber_typer.cpp: In constructor 'ATOM_TYPE::ATOM_TYPE()':
amber_typer.cpp:252: error: 'INT_MIN' was not declared in this scope
amber_typer.cpp: In member function 'void
ATOM_TYPER::get_vdw_labels(std::string, bool)':
amber_typer.cpp:286: error: 'strncmp' was not declared in this scope
amber_typer.cpp:347: error: 'strtok' was not declared in this scope
amber_typer.cpp:383: error: 'INT_MIN' was not declared in this scope
amber_typer.cpp:388: error: 'INT_MIN' was not declared in this scope
amber_typer.cpp: In member function 'int
ATOM_TYPER::assign_vdw_labels(DOCKMol&, int)':
amber_typer.cpp:476: error: 'strcmp' was not declared in this scope
amber_typer.cpp: In member function 'void
BOND_TYPER::get_flex_labels(std::string)':
amber_typer.cpp:532: error: 'strncmp' was not declared in this scope
amber_typer.cpp:545: error: 'strlen' was not declared in this scope
amber_typer.cpp:562: error: 'strtok' was not declared in this scope
amber_typer.cpp: In member function 'void
BOND_TYPER::get_flex_search(std::string)':
amber_typer.cpp:599: error: 'strtok' was not declared in this scope
amber_typer.cpp:601: error: 'strcmp' was not declared in this scope
amber_typer.cpp: In member function 'void
CHEM_TYPER::get_chem_labels(std::string)':
amber_typer.cpp:754: error: 'strncmp' was not declared in this scope
amber_typer.cpp:763: error: 'strtok' was not declared in this scope
make[2]: *** [amber_typer.o] Error 1


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