[Dock-fans] (no subject)

John J. Irwin jji at cgl.ucsf.edu
Mon Jun 30 10:32:00 PDT 2008


Hi Inderjit

It looks to me as if F77 may have been set to an empty string (""). 
Could it be that fortran is not installed, and that you have either 
edited the makefile or set F77 to an empty value to get around an 
earlier error message? Otherwise, I don't understand how you could have 
received the message you report. May I suggest you a) install fortran 
and b) revert to the unmodified file if necessary.

Good luck

John
UCSF DOCK Team

inderjit yadav wrote:
> sir
>  
> im installing dock on rocks cluster  .when making the make dock 
> command .would u please help me i m new to dock
>  
> Inderjit Singh
>  
> error
>  
>  
> program dock at Mon Jun 30 02:57:48 IST 2008.
>
> cd ../src/dock && make install
> make[1]: Entering directory `/home/inder/dock6/src/dock'
> cd nab && make all
> make[2]: Entering directory `/home/inder/dock6/src/dock/nab'
> ar rv nab.a molio.o prm.o sff.o traceback.o select_atoms.o memutil.o 
> reslib.o jacobi.o molutil.o chirvol.o regexp.o binpos.o time.o rand2.o 
> conjgrad.o database.o tleap.o
> r - molio.o
> r - prm.o
> r - sff.o
> r - traceback.o
> r - select_atoms.o
> r - memutil.o
> r - reslib.o
> r - jacobi.o
> r - molutil.o
> r - chirvol.o
> r - regexp.o
> r - binpos.o
> r - time.o
> r - rand2.o
> r - conjgrad.o
> r - database.o
> r - tleap.o
> ranlib nab.a
> make[2]: Leaving directory `/home/inder/dock6/src/dock/nab'
> DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX 
> -I/include -O2 -o dock6.mpi amber_typer.o base_grid.o base_mpi.o 
> base_score.o conf_gen.o dock.o dockmol.o grid.o library_file.o 
> master_score.o orient.o score.o simplex.o sphere.o score_solvent.o 
> score_amber.o sasa.o score_chemgrid.o utils.o trace.o nab/nab.a -lm
> make[1]: DBUILD_DOCK_WITH_MPI: Command not found
> make[1]: [dock6.mpi] Error 127 (ignored)
> mv dock6.mpi ../../bin
> mv: cannot stat `dock6.mpi': No such file or directory
> make[1]: *** [install] Error 1
> make[1]: Leaving directory `/home/inder/dock6/src/dock'
> make: *** [dock] Error 2
> [root at bifhpc install]#
>
> ------------------------------------------------------------------------
>
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