April 2009 Archives by thread

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Starting: Wed Apr 1 12:02:22 PDT 2009
Ending: Thu Apr 30 18:56:34 PDT 2009
Messages: 115

• [Dock-fans] How cut subsection of protein for spheres   John J. Irwin
• [Dock-fans] Generating New Orientations   Adam Griffith
  • [Dock-fans] Generating New Orientations   Scott Brozell
• [Dock-fans] sphgen, sphere_selector, showsphere programs   Mohd Afiq Hazlami
  • [Dock-fans] sphgen, sphere_selector, showsphere programs   CAI Qixu
• [Dock-fans] About "Error: memory exhausted!" problem   li bai
  • [Dock-fans] About "Error: memory exhausted!" problem   Scott Brozell
• [Dock-fans] How do it continue computing from the break point   li bai
  • [Dock-fans] How do it continue computing from the break point   Rashi Goyal
• [Dock-fans] sphgen problem   Edilson Beserra
  • [Dock-fans] sphgen problem   Sudipto Mukherjee
  • [Dock-fans] sphgen problem   John J. Irwin
• [Dock-fans] About the dock manual website problem   li bai
  • [Dock-fans] About the dock manual website problem   Scott Brozell
• [Dock-fans] sphgen problem   Edilson Beserra
• [Dock-fans] problem about the ranked result of DOCK6.2   Scott Brozell
  • [Dock-fans] problem about the ranked result of DOCK6.2   CAI Qixu
    • [Dock-fans] problem about the ranked result of DOCK6.2   Scott Brozell
• [Dock-fans] rec.sph problem   Edilson Beserra
• [Dock-fans] About the sphere file, xxx.sph   li bai
• [Dock-fans] About the sphere file, xxx.sph   li bai
  • [Dock-fans] About the sphere file, xxx.sph   Scott Brozell
• [Dock-fans] Setting 'Anchor' and 'Rigid' Atom Sets   Mohd Afiq Hazlami
  • [Dock-fans] Setting 'Anchor' and 'Rigid' Atom Sets   Scott Brozell
• [Dock-fans] problem in Dock6   shalu jhanwar
  • [Dock-fans] problem in Dock6   Scott Brozell
• [Dock-fans] SGI support   Scott Brozell
• [Dock-fans] how to sort the result mol2 file?   CAI Qixu
  • [Dock-fans] how to sort the result mol2 file?   CAI Qixu
    • [Dock-fans] how to sort the result mol2 file?   Scott Brozell
  • [Dock-fans] how to sort the result mol2 file?   Scott Brozell
• [Dock-fans] Problem with the DOCK 6.2 solvent_scoring_demo   Vidana.Epa at csiro.au
  • [Dock-fans] Problem with the DOCK 6.2 solvent_scoring_demo   Scott Brozell
    • [Dock-fans] Problem with the DOCK 6.2 solvent_scoring_demo   Vidana.Epa at csiro.au
• [Dock-fans] About extract one molecule from the .mol2 database   li bai
  • [Dock-fans] About extract one molecule from the .mol2 database   John J. Irwin
• [Dock-fans] About the "legacy_accessories" of the dock6   li bai
  • [Dock-fans] About the "legacy_accessories" of the dock6   CAI Qixu
• [Dock-fans] Sphere_generation problem   Wenjing.Shi at lvh.com
  • [Dock-fans] Sphere_generation problem   John J. Irwin
• [Dock-fans] Sphere_generation problem   Wenjing.Shi at lvh.com
  • [Dock-fans] Sphere_generation problem   John J. Irwin
    • [Dock-fans] Sphere_generation problem   Scott Brozell
• [Dock-fans] calculating binding sites volume overlap   Ben Keshet
  • [Dock-fans] calculating binding sites volume overlap   John J. Irwin
    • [Dock-fans] calculating binding sites volume overlap   Paul Hawkins
• [Dock-fans] request   shalu jhanwar
  • [Dock-fans] request   Scott Brozell
• [Dock-fans] About the "legacy_accessories" of the dock6   Aurum Bai
  • [Dock-fans] About the "legacy_accessories" of the dock6   Scott Brozell
• [Dock-fans] dock3.5.54   Collignon, Barbara C.
  • [Dock-fans] dock3.5.54   John J. Irwin
• [Dock-fans] Dock-fans Digest, Vol 59, Issue 13   shalu jhanwar
  • [Dock-fans] Dock-fans Digest, Vol 59, Issue 13   John J. Irwin
• [Dock-fans] MPI-DOCK6   Collignon, Barbara C.
  • [Dock-fans] MPI-DOCK6   John J. Irwin
    • [Dock-fans] MPI-DOCK6   Collignon, Barbara C.
• [Dock-fans] References about PBSA score calculation in Dock 6.2   Suhaib Shekfeh
  • [Dock-fans] References about PBSA score calculation in Dock 6.2   Scott Brozell
• [Dock-fans] grid-convert segmentation fault   Collignon, Barbara C.
  • [Dock-fans] grid-convert segmentation fault   Scott Brozell
• [Dock-fans] how to deal with the result of DOCK except viewdock   CAI Qixu
  • [Dock-fans] how to deal with the result of DOCK except viewdock   John J. Irwin
• [Dock-fans] is there "scored_mol_output_override"?   CAI Qixu
  • [Dock-fans] is there "scored_mol_output_override"?   Scott Brozell
• [Dock-fans] protein-protein-peptide docking   selva kumar
  • [Dock-fans] protein-protein-peptide docking   John J. Irwin
    • [Dock-fans] protein-protein-peptide docking   Scott Brozell
• [Dock-fans] how to deal with the result of DOCK except viewdock   Eric Pettersen
• [Dock-fans] Cannot find consistent set of bond orders   Eric Pettersen
• [Dock-fans] cpu time vs real time   Collignon, Barbara C.
  • [Dock-fans] cpu time vs real time   Scott Brozell
• [Dock-fans] dock6 std::out_of_range   Collignon, Barbara C.
  • [Dock-fans] dock6 std::out_of_range   Scott Brozell
• [Dock-fans] About the "program cluster"？   Aurum Bai
• [Dock-fans] About the "program cluster"？   Aurum Bai
• [Dock-fans] About the "program cluster"？   Aurum Bai
  • [Dock-fans] About the "program cluster"？   John J. Irwin
    • [Dock-fans] About the "program cluster"？   CAI Qixu
• [Dock-fans] different RMSD calculated with Dock and Chimera   Ben Keshet
  • [Dock-fans] different RMSD calculated with Dock and Chimera   Michael Mysinger
• [Dock-fans] different RMSD calculated with Dock and Chimera   Ben Keshet
  • [Dock-fans] different RMSD calculated with Dock and Chimera   Eric Pettersen
• [Dock-fans] parameters   Francesco Pietra
  • [Dock-fans] Fwd: parameters   Francesco Pietra
• [Dock-fans] segmentation fault - Dock3.5 Score in Dock6.2   Collignon, Barbara C.
  • [Dock-fans] segmentation fault - Dock3.5 Score in Dock6.2   Collignon, Barbara C.
  • [Dock-fans] segmentation fault - Dock3.5 Score in Dock6.2   John J. Irwin
• [Dock-fans] Compilation problems with dock 6.2/intel   Francesco Pietra
  • [Dock-fans] Fwd: Compilation problems with dock 6.2/intel   Francesco Pietra
    • [Dock-fans] Fwd: Compilation problems with dock 6.2/intel   Scott Brozell
• [Dock-fans] problem related to rmsd calculation   shalu jhanwar
• [Dock-fans] not found -lacml_mv   Francesco Pietra
  • [Dock-fans] Fwd: not found -lacml_mv   Francesco Pietra
    • [Dock-fans] Fwd: not found -lacml_mv   Scott Brozell
• [Dock-fans] compiler issues   Collignon, Barbara C.
  • [Dock-fans] compiler issues   Alessandro Nascimento
  • [Dock-fans] compiler issues   Michael Mysinger
    • [Dock-fans] compiler issues   Collignon, Barbara C.
• [Dock-fans] Scoring Function   Danan S. Wicaksono
  • [Dock-fans] Scoring Function   John J. Irwin
• [Dock-fans] about/cmd/leaprc*   Francesco Pietra
  • [Dock-fans] about/cmd/leaprc*   Scott Brozell
• [Dock-fans] problem related to rmsd   shalu jhanwar
  • [Dock-fans] problem related to rmsd   Scott Brozell
• [Dock-fans] Dock-fans Digest, Vol 59, Issue 21   Ben Keshet
  • [Dock-fans] Dock-fans Digest, Vol 59, Issue 21   John J. Irwin
  • [Dock-fans] Dock-fans Digest, Vol 59, Issue 21   Eric Pettersen
  • [Dock-fans] Dock-fans Digest, Vol 59, Issue 21   Michael Mysinger
    • [Dock-fans] Dock-fans Digest, Vol 59, Issue 21; rmsd vote   Scott Brozell
      • [Dock-fans] Dock-fans Digest, Vol 59, Issue 21; rmsd vote   Ben Keshet
      • [Dock-fans] Dock-fans Digest, Vol 59, Issue 21; rmsd vote   Scott Brozell
• [Dock-fans] grid-convert segmentation fault   Scott Brozell
  • [Dock-fans] grid-convert segmentation fault   Collignon, Barbara C.
    • [Dock-fans] grid-convert segmentation fault   Scott Brozell

Last message date: Thu Apr 30 18:56:34 PDT 2009
Archived on: Thu Apr 30 18:56:47 PDT 2009

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