[Dock-fans] examine possible binding orientations of protein-protein and protein-DNA complexes

John J. Irwin jji at cgl.ucsf.edu
Thu Jul 30 14:16:42 PDT 2009


*: *Protein Sci. <javascript:AL_get(this, 'jour', 'Protein Sci.');> 2002
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    *Lorber DM*
    </sites/entrez?Db=pubmed&Cmd=Search&Term=%22Lorber%20DM%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus>, *Udo
    MK*
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*: *RNA. <javascript:AL_get(this, 'jour', 'RNA.');> 2009
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<javascript:PopUpMenu2_Set(Menu19369428);>


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    EC*
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    V*
    </sites/entrez?Db=pubmed&Cmd=Search&Term=%22Thomas%20V%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus>, *Rizzo
    RC*
    </sites/entrez?Db=pubmed&Cmd=Search&Term=%22Rizzo%20RC%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus>, *Case
    DA*
    </sites/entrez?Db=pubmed&Cmd=Search&Term=%22Case%20DA%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus>,*James
    TL*
    </sites/entrez?Db=pubmed&Cmd=Search&Term=%22James%20TL%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus>, *Kuntz
    ID*
    </sites/entrez?Db=pubmed&Cmd=Search&Term=%22Kuntz%20ID%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus>.






* *Biopolymers. <javascript:AL_get(this, 'jour', 'Biopolymers.');> 2004
Feb 5;73(2):192-204 <javascript:PopUpMenu2_Set(Menu14755577);>


        Calculation of ligand-nucleic acid binding free energies with
        the generalized-born model in DOCK.

    *Kang X*
    </sites/entrez?Db=pubmed&Cmd=Search&Term=%22Kang%20X%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus>, *Shafer
    RH*
    </sites/entrez?Db=pubmed&Cmd=Search&Term=%22Shafer%20RH%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus>, *Kuntz
    ID*
    </sites/entrez?Db=pubmed&Cmd=Search&Term=%22Kuntz%20ID%22%5BAuthor%5D&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_RVAbstractPlus>.








hope this is useful
John




Haridas Paul wrote:
> Hi,
> Dock manual mentions..
> *1.2. What Can DOCK Do for You *
> *...*
> ......
> ....
> >>>examine possible binding orientations of protein-protein and
> protein-DNA complexes<<<
> Can you mention any review(s) or paper(s) supporting the above.
> With regards.
> h4r1d4s.p4ul at yahoo.com <mailto:h4r1d4s.p4ul at yahoo.com>
>


Haridas Paul wrote:
> Hi,
> Dock manual mentions..
> *1.2. What Can DOCK Do for You *
> *...*
> ......
> ....
> >>>examine possible binding orientations of protein-protein and
> protein-DNA complexes<<<
> Can you mention any review(s) or paper(s) supporting the above.
> With regards.
> h4r1d4s.p4ul at yahoo.com <mailto:h4r1d4s.p4ul at yahoo.com>
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> Dock-fans mailing list
> Dock-fans at docking.org
> http://blur.compbio.ucsf.edu/mailman/listinfo/dock-fans
>   
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