[Dock-fans] make test

Scott Brozell sbrozell at rci.rutgers.edu
Tue Jun 9 19:20:48 PDT 2009


Hi,

On Wed, Jun 03, 2009 at 12:21:35AM -0700, hannah pamela tan wrote:
> After getting a new version of the cygwin, i was able to finally install the DOCK 6.2 program.however, after testing the built executables using the command
> cd test; make test
> here is what showed up in the latter part of the processing, which ended up in an error..
> ==============================================================
> 
> possible
> FAILURE:  check secondary7.dockout.dif
> 
> ==============================================================
> 
> possible
> FAILURE:  check
> secondary7_primary_conformers.mol2.dif
> 
> ==============================================================
> 
> possible
> FAILURE:  check
> secondary7_secondary_conformers.mol2.dif
> 
> ==============================================================
> 
> possible
> FAILURE:  check
> secondary7_primary_scored.mol2.dif
> 
> ==============================================================
> 
> possible
> FAILURE:  check secondary7_secondary_scored.mol2.dif
> 
> ==============================================================
> 
> Error from
> amberize_ligand; the name of the ligand is
> 
>     @<TRIPOS>MOLECULE
> 
>     examine amberize_ligand.1.out
> 
> Error from
> amberize_ligand; examine amberize_ligand.1.out
> 
> make[2]: Leaving
> directory `/cygdrive/c/dock6/install/test/amber_score_181l'

The test suite will emit the .dif files; so review those.
For the amber failure, what did you uncover when you
examined amberize_ligand.1.out

Scott



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