[Dock-fans] About the RMSD of the DocK

Scott Brozell sbrozell at rci.rutgers.edu
Tue Jun 30 11:51:58 PDT 2009


Hi,

On Mon, Jun 22, 2009 at 03:10:31AM -0700, Aurum Bai wrote:
> 
> When I dock the ligand to the protein, the result of RMSD is 146.76,this value is very large.
> 
> I found the value of RMSD is good at the 1~3. 
> 
> How could I decrease the value of RMSD? 

Do better docking: more sampling, better scoring, better leads, etc.

Scott



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