[Dock-fans] INSPH part 3

Scott Brozell sbrozell at rci.rutgers.edu
Tue Nov 3 12:29:39 PST 2009


Hi,

On Mon, Oct 26, 2009 at 03:51:49PM -0400, David Taylor wrote:
> Even better. I deleted the other INSPH files and made a new one myself. Then
> I did:
> 
> INPUT: /home/molecular/Desktop/dock6/bin/sphgen -i INSPH -o OUTSPH
> 
> OUTPUT: open: No such file or directory
>                  apparent state: unit 4 named 1LAH.ms
>                  lately reading sequential formatted external IO
>                  Aborted
> 
> Not only that, but it created an OUTSPH file with nothing in it! I really
> don't know what's going on now! Does the 1LAH.ms file have to be in the same
> folder as sphgen or does it need to be in a different one? Right now I have
> one in the same folder, but I have no idea where I actually NEED one.

You have probably resolved this by now.
If not then start with the tutorial files:
http://dock.compbio.ucsf.edu/DOCK_6/tutorials/sphere_generation/generating_spheres.htm
verify that it works, then incrementally modify it to your rec-lig system.

Scott



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