[Dock-fans] ubuntu yacc; was Re: [Fwd: Re: Your DOCK 6 license has been approved]

Scott Brozell sbrozell at rci.rutgers.edu
Thu Sep 17 16:52:34 PDT 2009


Hi,

On Thu, Sep 17, 2009 at 03:00:23PM +0200, Stéphane Ransac wrote:
> Thank you very much, now it works !
>
> now I have to get the program working... a big documentation to read !

Great; thanks for the feedback.
http://dock.compbio.ucsf.edu/DOCK_6/tutorials/index.htm
is a good place to start.

Scott

On Wed, Sep 16, 2009 at 03:37:09PM -0400, Scott Brozell wrote:
> On Wed, Sep 16, 2009 at 05:31:41PM +0200, Stéphane Ransac wrote:
> > 
> > Thank you for your message. I just download dock 6.3 and try to install it on my computer (ubuntu 9.04).
> > 
> > Make dock    works even if I got a lot of warning message.
> > 
> > However, make utils leads to an error :
> > 
> > ...
> > gcc -c -O2 -DSYSV variables.c
> > yacc parser.y
> > make[2]: yacc: Command not found
> > make[2]: *** [parser.c] Error 127
> > make[2]: Leaving directory `/home/ransac/dock6/src/tleap'
> > make[1]: *** [utils] Error 2
> > make[1]: Leaving directory `/home/ransac/dock6/src'
> > make: *** [utils] Error 2
> > 
> > 
> > I try to look for a "yacc" command or program but I did not found it. Since I'm still a novice in unix system, I do not know how to solve it.
> > 
> 
> The story is here:
> http://dock.compbio.ucsf.edu/DOCK_6/faq.htm#yacc:Commandnotfound
> 
> The ubuntu fix is 
> sudo apt-get install byacc
> Then 
> which yacc
> should emit
> /usr/bin/yacc
> 
> Rebuild via:
> cd install
> make utils
> make test
> 
> Scott


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