[Dock-fans] Dock and divcon

Scott Brozell sbrozell at rci.rutgers.edu
Thu Sep 17 17:53:53 PDT 2009


Hi,

On Tue, Sep 01, 2009 at 10:50:24AM +0300, Andrei Neamtu wrote:
> 
> I am trying to install Dock 6.3 on a Ubuntu 9.04 distro. I succeeded
> in compiling the code and I try to run now the test validation suite.
> The tests are successful up to a test where Dock is trying to find the
> divcon executable from the Amber distribution installed on the system
> (I have Amber 10)
> 
> Presently, Amber 10 does not create an stand alone executable for
> divcon, but uses instead mopac6.
> 
> The problem is that Dock wants to find the divcon even if I set the
> environment variable DOCK_HOME to point to the root directory of Dock
> distribution and I erase the AMBERHOME env variable.

Hmm, unsetting AMBERHOME should fix that.
Do you have any new info here ?
Background:
http://dock.compbio.ucsf.edu/DOCK_6/faq.htm#getpdb:%20can't%20open%20file%20lig.1.amber.pdb

Scott



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