[Dock-fans] Post-Dock 6.3 version - improvements and corrections

Vidana.Epa at csiro.au Vidana.Epa at csiro.au
Mon Sep 21 23:28:35 PDT 2009


Dear Scott,

	Is there an approximate date when you expect to release the new version, with the improvements to sampling implementations and corrections to prevent steric clashes, omitted from v.6.3?

Thanks.

Cheers,

Vidana.


Vidana C. Epa
 
CSIRO,
Division of Molecular Health & Technologies,
343 Royal Parade,
Parkville, Victoria 3052,
AUSTRALIA.
 
tel: (61) - 3 - 9662 - 7345
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email: Vidana.Epa at csiro.au
-----Original Message-----
Message: 1
Date: Fri, 24 Jul 2009 22:33:23 -0400
From: Scott Brozell <sbrozell at rci.rutgers.edu>
Subject: [Dock-fans] Announcing: Release of DOCK 6.3
To: dock-fans at docking.org
Message-ID: <20090725023323.GA8786 at casegroup.rutgers.edu>
Content-Type: text/plain; charset=us-ascii



--- * ---

DOCK 6.3

This is a release of the version applied in the DOCK6 paper [1].
Recent improvements to the sampling implementation and corrections to 
prevent steric clashes that have been mentioned on the Dock-fans list
[2] are not incorporated here; they will appear in the next version
which is expected to be released soon.


REFERENCES

1. "DOCK 6: Combining Techniques to Model RNA-Small Molecule Complexes,"
P. T. Lang, S. R. Brozell, S. Mukherjee, E. F. Pettersen, E. C. Meng, V.
Thomas, R. Rizzo, D. A. Case, T. L. James, and I. D. Kuntz, RNA, Vol. 15,
1219-1230 (2009). 

2. http://blur.compbio.ucsf.edu/pipermail/dock-fans/2009-May/002058.html



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