[Dock-fans] peptide docking
sudmukh at yahoo.com
Fri Apr 9 14:11:00 PDT 2010
DOCK is not primarily meant for protein-protein docking; rather it is meant to predict small molecule interactions. However, I have observed good results docking in small peptides with the current development version which will be released soon as DOCK 6.4.
Graduate Student, Robert C. Rizzo Lab
Dept. of Applied Math & Statistics, Stony Brook University
From: "Knut.Bjuland at student.uib.no" <Knut.Bjuland at student.uib.no>
To: dock-fans at mailman.docking.org
Sent: Wed, April 7, 2010 4:27:58 PM
Subject: [Dock-fans] peptide docking
I am working on master theist in structural bioinformatic. I am going
to dock a peptide with 4-5 amino acid into a protein. Is it possible
to use dock 6 to dock a peptide and the protein in flexible manner.
Has dock 6 participated in Capri
http://www.ebi.ac.uk/msd-srv/capri/capri.html, and how do I read how
well it scored.
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