[Dock-fans] how select active site manually from cluster
pawanguptainfo at yahoo.co.in
Tue Jul 6 23:51:29 PDT 2010
I beginner of Dock program.
Sir I have gone through the tutorial which you given on your site, one problem i
faced during the tutorial that i did not able to select the active site manually
even-if my protein did not have co-crystallized ligand.
I know the active site center coordinate (XYZ) which is give my receptor_noH.pdb
How to select active site residues?
Tell how to dock the molecules in solvation state of protein and what is the
significance of it from normal docking?
I did not find any tutorial regarding solvation docking.
which score is better ?
i calculated contact socre, but how i analyaze the score
thanks in advance
NIPER, Mohali, India.
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