[Dock-fans] How to dock in protein which doesn't have reference internal ligand

diya singh diya.singh01 at gmail.com
Tue Jul 19 08:18:06 PDT 2011

Dear DOCK user,

I have learned the basics of DOCK6. I am trying to figure out how should I
go ahead in docking procedure if my PDB protein doesn't have internal
ligand. When I tried using my external molecule as ligand. Sphgen command
results 0 spheres.

How should I dock in such kind of protein.

I will appreciate your response.

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