[Dock-fans] Fwd: query related to grid size

Trent E. Balius tbalius at aol.com
Sat Jan 28 09:15:51 PST 2012


See the grid section of the manual:


See the docking tutorials located at the following link:

The first 3 tutorials will walk you through the process of preparing your receptor for docking.

Also, see the Rizzo lab tutorial:

Note that you can visualize your grid with the program UCSF Chimera.

I hope that this helps,


Trent E. Balius
Graduate Student, Rizzo Group,
Department of Applied Mathematics and Statistics,
Stony Brook University.
Office: Math Tower 3-129, Phone: (631) 632-8519
URL: http://www.ams.sunysb.edu/~tbalius/



-----Original Message-----
From: John Irwin <jir322 at gmail.com>
To: dock-fans <dock-fans at docking.org>
Cc: minachitomar.bhubioinfo <minachitomar.bhubioinfo at gmail.com>
Sent: Fri, Jan 27, 2012 11:56 am
Subject: [Dock-fans] Fwd: query related to grid size

forwarded to the list. btw, it is free to upgrade to 6.5, which we
strongly advise.

---------- Forwarded message ----------
From: jyotisingh tomar <minachitomar.bhubioinfo at gmail.com>
Date: Fri, Jan 27, 2012 at 4:35 AM
Subject: query related to grid size
To: John Irwin <jir322 at gmail.com>

Dear Sir
               I an using  dock6.4 program and most of the time i m
facing problem while fixing grid size
in RNA range is ~ 25 for duplex DNA ~150 why it is so?
 in autodock we can visualize grid and fix easily is any easy way to
fix the grid size in dock also
hard work is key of success
Dock-fans mailing list
Dock-fans at docking.org

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