[Dock-fans] DOCK 6 Download Password Reissued

Scott Brozell sbrozell at rci.rutgers.edu
Wed Jun 27 00:01:03 PDT 2012


Hi,

On Tue, Jun 26, 2012 at 06:33:34AM -0700, John Irwin wrote:
> forwarding to the list
> On Tue, Jun 26, 2012 at 3:35 AM, Fabian Glaser <fglaser at technion.ac.il>wrote:
> > I cannot compile grid on my Mac OSX, I tried both g77 and gfortran and the
> > problems seems to be related to the architecture. Can grid be compiled into
> > a 64 OSX machine?
> >
> > g77  -O2 -fno-automatic -fno-second-underscore grid.o score.o score_grid.o
> > gridpoint.o define.o io.o io_grid.o io_gridf.o mol_prep.o io_receptor.o
> > io_mol2.o io_pdb.o io_ptr.o io_sph.o label.o label_node.o label_chem.o
> > label_vdw.o label_flex.o mol.o search.o transform.o transformf.o parm.o
> > parm_grid.o rotrans.o utility.o vector.o -lm -lpthread -o grid \
> >
> > ld: warning: -macosx_version_min not specificed, assuming 10.7
> > ld: warning: ignoring file grid.o, file was built for unsupported file
> > format which is not the architecture being linked (i386)
> > ld: warning: ignoring file score.o, file was built for unsupported file
> > format which is not the architecture being linked (i386)
...
> > Undefined symbols for architecture i386:
> >  "_MAIN__", referenced from:
> >      _main in libfrtbegin.a(frtbegin.o)
> > ld: symbol(s) not found for architecture i386
> > collect2: ld returned 1 exit status
> > make: *** [grid] Error 1

grid has been built on Mac OSX.
It looks like you have leftover object files (.o's) from a previous build.
Have you tried:
cd dock6/install
make realclean
make
?

Please try searching the archives:
http://dock.compbio.ucsf.edu/DOCK_6/index.htm#searchdockfans
A short search found these:
http://mailman.docking.org/pipermail/dock-fans/2011-June/002551.html
http://mailman.docking.org/pipermail/dock-fans/2010-June/002380.html

Look here for general mac advice:
http://jswails.wikidot.com/mac-os-x

scott



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