[Dock-fans] Installation of DOCK 6.6 on a Mac

Scott Brozell sbrozell at rci.rutgers.edu
Thu Jan 23 14:21:05 PST 2014


Hi,

The errors below indicate that sphgen and dock6 were not built.
You need to examine the output from the first make command:

> >> >cd dock6/install; ./configure gnu; make; make test

scott

On Thu, Jan 23, 2014 at 03:06:43PM +0000, msmith at mcdaniel.edu wrote:
> Scott - I have now downloaded the tools to run the "make" command and have
> gotten the following errors.  Can you please tell me if any of these are
> significant and if so, how to fix them?
> Thanks once again.  Marilyn
> 
> make test
> cd test && make test
> Starting validation of
> DOCK v6.6
> at Thu Jan 23 10:03:08 EST 2014.
> 
> make utils; make dock
> cd sphere_generation && make test
> # Construct sphere set in active site
> ../../../bin/sphgen
> make[3]: ../../../bin/sphgen: No such file or directory
> make[3]: *** [sphgen] Error 1
> make[2]: *** [utils] Error 2
> cd anchor_and_grow && make test
> make DOCK_VERBOSE='-v' flex1.dockout flex2.dockout flex3.dockout
> flex4.dockout flex5.dockout fad6_growthtree.dockout
> 
> Processing dock6 test flex1
> ../../../bin/dock6 -v -i flex1.dockin -o flex1.dockout
> make[4]: ../../../bin/dock6: No such file or directory
> make[4]: *** [flex1.dockout] Error 1
> make[3]: *** [test] Error 2
> make[2]: *** [sampling] Error 2
> make[1]: *** [timed_test] Error 2
> make: *** [test] Error 2
> 
> 
> On 1/20/14 4:15 PM, "Scott Brozell" <sbrozell at rci.rutgers.edu> wrote:
> 
> >Hi,
> >
> >Apparently your Mac does not have normal build tools, like make,
> >installed.  Follow the advice in the links below.
> >Another source for getting your Mac up to scientific speed is
> >http://jswails.wikidot.com/mac-os-x
> >
> >scott
> >
> >On Mon, Jan 20, 2014 at 08:52:18PM +0000, msmith at mcdaniel.edu wrote:
> >> Scott - when I use you install commands below, I get "the DOCK
> >> configuration file has been created."  So that is fine.  When I then
> >>type
> >> "make" I get the following error
> >> "-bash: make: command not found".  Can you help me with this problem?
> >> Thanks so much.
> >> Marilyn
> >> 
> >> On 1/16/14 10:46 PM, "Scott Brozell" <sbrozell at rci.rutgers.edu> wrote:
> >> 
> >> >Hi,
> >> >
> >> >On Thu, Jan 16, 2014 at 07:31:24PM +0000, msmith at mcdaniel.edu wrote:
> >> >> Hi ­ can you please point me to a good reference for installing DOCK
> >>on
> >> >>my Mac?  I am running OSX Version 10.8.5.  I have the program
> >>downloaded
> >> >>and can't get past the config instruction.  When I try to run "make
> >>all"
> >> >>I get an error.  Thanks in advance.
> >> >> Marilyn Smith
> >> >> McDaniel College
> >> >> Westminster, MD 21798
> >> >> Software  OS X 10.8.5 (12F45)
> >> >> Graphics  NVIDIA GeForce GT 640M 512 MB
> >> >> Processor  2.7 GHz Intel Core i5
> >> >> Memory  8 GB 1600 MHz DDR3
> >> >
> >> >Use the gnu config file:
> >> >cd dock6/install; ./configure gnu; make; make test
> >> >
> >> >There are some recent Mac posts; search the archives
> >> >http://dock.compbio.ucsf.edu/DOCK_6/index.htm#searchdockfans
> >> >to find, e.g.,
> >> 
> >>>http://mailman.docking.org/pipermail/dock-fans/2013-December/002868.html
> >> 
> >>>http://mailman.docking.org/pipermail/dock-fans/2013-December/002854.html
> >> >
> >> >Please send verbose and verbatim details if you encounter problems.
> >> >
> >> >thanks you,
> >> >scott


More information about the Dock-fans mailing list