[Dock-fans] Finding Local Minima of Binding Free Energies

Toan Nguyen toan.nguy at berkeley.edu
Wed Jul 26 12:41:40 PDT 2017


Hello,

My research team is trying to use Dock to simulate a protein-RNA
interaction and we're looking for the local minima in the binding free
energy of the various poses produced by Dock. However, we are having
difficulty in grouping the poses into clusters to find these local minima.

Does anyone know how to this could be done using Dock?
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