[Dock-fans] Fwd: Help to resolve the error
jir322 at gmail.com
Tue Nov 14 09:51:19 PST 2017
forwarding to the list
---------- Forwarded message ----------
From: Maria Saeed <mariyasaeed at yahoo.com>
Date: Tue, Nov 14, 2017 at 12:58 AM
Subject: Help to resolve the error
To: "dock_bugs at dock.compbio.ucsf.edu" <dock_bugs at dock.compbio.ucsf.edu>
I have updated version of Fortran77 but I am failed to install DOCK6.8
in Ubuntu 16.04, kindly suggest me to where I am wrong , I used make
clean and rebuild configure it doesn't work,
I tried to fix by this
Fixed the problem after adding these headers
in following files.
It doesn't work
I need your help to resolve this issue.
root at mcg04:/usr/local/dock6/install# ls
bluegenel configure gnu.acml gnu.parallel.pbsa ibmaix
intel.intelmpi.parallel intel.parallel pgi sgi
bluegenep gnu gnu.parallel gnu.pbsa intel
intel.mkl Makefile rules.h sgi.parallel
root at mcg04:/usr/local/dock6/install# ./configure gnu
The requested configuration file was found.
The DOCK configuration file has been created.
root at mcg04:/usr/local/dock6/install# make all
Starting installation of
at منگل نومبر 14 13:51:41 PKT 2017.
cd ../src && make install
make: Entering directory '/usr/local/dock6/src'
cd dock && make install
make: Entering directory '/usr/local/dock6/src/dock'
g++ -c -O2 -o amber_typer.o amber_typer.cpp
amber_typer.cpp:437:13: internal compiler error: Illegal instruction
types[i].bump_id = NINT(10.0 * types[i].radius);
Please submit a full bug report,
with preprocessed source if appropriate.
See <http://gcc.gnu.org/bugs.html> for instructions.
../../install/rules.h:36: recipe for target 'amber_typer.o' failed
make: *** [amber_typer.o] Error 1
make: Leaving directory '/usr/local/dock6/src/dock'
Makefile:13: recipe for target 'dock6' failed
make: *** [dock6] Error 2
make: Leaving directory '/usr/local/dock6/src'
Makefile:10: recipe for target 'install' failed
make: *** [install] Error 2
Waiting of your response.
With Best Regards,
Lab No. P-133, Computational Chemistry Unit,
Dr. Panjwani Center for Molecular Medicine and Drug Research,
International Center for Chemical and Biological Sciences,
University of Karachi-75270.
UAN: (92-21) 111-222-292 Ext. (309)
E-mail: mariyasaeed at yahoo.com , mariya.saeed at iccs.edu
"Please consider your environmental responsibility before printing
this e-mail and its attachments"
More information about the Dock-fans