[Dock-fans] Fwd: Help to resolve the error

Scott Brozell sbrozell at rci.rutgers.edu
Tue Nov 14 10:50:59 PST 2017


Hi,

On Tue, Nov 14, 2017 at 09:51:19AM -0800, John Irwin wrote:
> forwarding to the list
> ---------- Forwarded message ----------
> From: Maria Saeed <mariyasaeed at yahoo.com>
> 
> I have updated version of Fortran77 but I am failed to install DOCK6.8
> in Ubuntu 16.04, kindly suggest me to where I am wrong , I used make
> clean and rebuild configure it doesn't work,
> I tried to fix by this
> 
> Fixed the problem after adding  these headers
> #include <limits.h>
> #include <cstring>
> 
> in following files.
> 
> amber_typer.cpp
> conf_gen.cpp
> dockmol.cpp
> library_file.cpp
> orient.cpp
> score.cpp
> simplex.cpp
> ..

Were there other errors than that listed below ?
Otherwise, i do not see any relationship between your
effort and the actual error message below.

> It doesn't work
> 
> I need your help to resolve this issue.
> root at mcg04:/usr/local/dock6/install# ./configure gnu
> The requested configuration file was found.
> The DOCK configuration file has been created.
> root at mcg04:/usr/local/dock6/install# make all
> Starting installation of
> DOCK v6.8
> at ???????? ?????????? 14 13:51:41 PKT 2017.
> 
> cd ../src && make install
> make[1]: Entering directory '/usr/local/dock6/src'
> cd dock && make install
> make[2]: Entering directory '/usr/local/dock6/src/dock'
> g++ -c  -O2 -o amber_typer.o  amber_typer.cpp
> amber_typer.cpp:437:13: internal compiler error: Illegal instruction
>              types[i].bump_id = NINT(10.0 * types[i].radius);
>              ^
> Please submit a full bug report,

That's an unusual error that typically indicates a compiler bug.
Sometimes massaging the code can eliminate the problem.
What is the version of g++?

scott



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